Computational laboratory

Computational laboratory for modeling, simulation, analysis, and graphical display of protein and protein-composed structures exposed to an electric pulsed field, high-frequency chips, and pulsed chips compatible with superresolution microscopy techniques.

Equipment:

  • Workstations with CPU as AMD Ryzen Threadripper Pro 3975WX, 3960X, and 1920X with GPU as GeForce RTX 4090, 2080Ti, and 1080Ti
  • QNAP data storage of 258 TB
  • Metacentrum

Programs:

  • VMD – Visual Molecular Dynamics
  • Gromacs
  • Yasara
  • Amber18
  • CST Studio Suite | SIMULIA (Dassault Systémes)
  • Matlab (MathWorks)
  • Python
  • Fusion 360 (Autodesk)
  • CorelDRAW Graphics Suite
  • Affinity Designer and Photo
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